Clinical Immunology
○ Elsevier BV
Preprints posted in the last 30 days, ranked by how well they match Clinical Immunology's content profile, based on 12 papers previously published here. The average preprint has a 0.05% match score for this journal, so anything above that is already an above-average fit.
Razazan, A.; Merriman, M.; Burden, N.; Reynolds, R.; Joosten, L. A.; Hussain, S.; Merriman, T.
Show abstract
Gout is driven by an interleukin-1{beta}-mediated intense innate immune reaction to monosodium urate (MSU) crystals (MSUc). In cell culture models of inflammatory gout there is a synergistic effect of phagocytosis of MSUc and TLR2 and TLR4 activation by agonists such as free fatty acid and lipopolysaccharide (LPS) in NLRP3-inflammasome activation and IL-1{beta} secretion. A substantial number of gout patients do not report a dietary trigger, and observational studies associate airborne particulate matter with incident gout and flares. Airborne particulate matter contains LPS and airborne-derived particulate matter stimulates IL-1{beta} secretion in cell culture. We hypothesized that air-borne particulate matter could co-stimulate, with MSUc, IL-1{beta} secretion and inflammation. We tested the hypothesis using MSUc with extracted airborne PM4 in human cells (the THP-1 monocyte cell line, primary human monocytes and PBMCs) or carbon black particles with ozone (CB+O3) in a murine foot-pad injection model of gout. There was strong NLRP3-inflammasome-dependent co-stimulation of IL-1{beta} secretion in THP-1 cells with PM4+MSUc and a moderate additive effect in primary human PBMCs. However, there was no added effect on IL-1{beta} secretion of PM4 in isolated primary human monocytes. Inhalation of CB+O3 persistently exacerbated MSUc-induced murine paw inflammation, with an increase of alveolar/lavage macrophages that contained CB+O3 particles and increased lavage expression of IL-1{beta}. In conclusion, airborne-derived PM4 particulate matter enhanced MSUc-induced IL-1{beta} secretion in THP-1 cells and PBMCs. Combined with exacerbation of MSUc-induced inflammation by fine particulate matter in in vivo experiments, these data provide evidence that exposure to fine particulate matter may play a role in the etiology of gout.
Solotchi, M.; Jing, H.; Gebauer, E.; Novick, S. J.; Pascal, B. D.; Tung, W.; Hanpude, P.; Zhang, Y.; Alba, C.; Saracino, A.; Laghetti, P.; Shaw, E. R.; Rosen, L. B.; Holland, S. M.; Lisco, A.; Dalgard, C. L.; Marcotrigiano, J.; Griffin, P. R.; Su, H. C.; Patel, S. S.
Show abstract
RIG-I is a cytosolic immune receptor that provides the first line of defense by detecting viral RNA and triggering antiviral responses. Its physiological role in humans remains unclear, as no patients with complete RIG-I deficiency have yet been reported. We identified a critically ill COVID-19 patient with severe RIG-I deficiency caused by heterozygous RIG-I G731R, a novel dominant loss-of-function variant. The G731R mutation in helicase motif VI disrupts the arginine finger, impairing the ATPase activity of RIG-I, but not its RNA-binding ability. However, viral RNA binding fails to expose the signaling domains, thereby impairing the IFN-{beta} response of G731R. Instead, G731R competes with wild-type RIG-I, exerting a dominant negative effect. The loss-of-function is caused by bulky-charged substitutions at G731, as alanine or leucine substitution results in an unexpected gain-of-function phenotype. These findings highlight the importance of uncompromised RIG-I function for human antiviral immunity and the pleiotropic effects of single mutations.
Nishio, Y.; Ishikawa, Y.; Uchiyama, S.; Liu, X.; Takada, S.; Kuroshima, T.; Yoshifuji, h.; Kodera, M.; Akahoshi, M.; Niiro, H.; Motegi, S.-i.; Hasegawa, M.; Asano, Y.; Nakayamada, S.; Tanaka, Y.; Koyanagi, Y. N.; Matsuo, K.; Kawaguchi, Y.; Kuwana, M.; Imoto, I.; Yamaguchi, Y.; Terao, C.
Show abstract
ObjectivesMosaic chromosomal alterations (mCAs) increase with age and are associated with many diseases, including autoimmune diseases. The associations between mCAs and systemic sclerosis (SSc) and its clinical subtypes have not been explored. MethodsWe recruited study subjects from two independent datasets (Set 1: 635 SSc, 4,401 controls; Set 2: 347 SSc, 2,170 controls) and detected mCAs (Loss, LOH, Gain, and mLOX) from their peripheral blood samples. Logistic regression analyses were conducted with covariates in each cohort, and the results were meta-analyzed. We also conducted stratified analyses by age groups, the age at disease onset, clinical phenotypes based on the skin lesions, autoantibody profiles, the presence of complications. ResultsWe observed a trend of increased Loss in SSc, especially in old age (P=0.0063). The association of Loss was strengthened in certain subtypes of SSc, including lcSSc (OR=2.22, P=0.019) and SSc with vascular complications (digital ulcers, pulmonary hypertension, or renal crisis, OR=3.30, P=0.0054). The effect sizes of Loss increased in patients with high cell fractions (CFs). We also observed that mLOX was significantly associated with SSc, lcSSc, and ACA-SSc only for subjects with high CFs. mLOX was significantly associated with lcSSc and ACA-SSc even compared with dcSSc and ATA-SSc, respectively. These associations were consistently observed in each of the two data sets. Finally, we identified majority of the associations of Loss were mainly driven by SSc with late age at onset. ConclusionsLoss and mLOX were significantly and differentially associated with SSc and its subtypes, underscoring potential phenotype-specific contributions of mCAs. WHAT IS ALREADY KNOWN ON THIS TOPICO_LISystemic sclerosis (SSc) is a heterogeneous disease, with its phenotypes and disease outcomes varying among patients. C_LIO_LIAge-related mosaic chromosomal alterations (mCAs) in blood and subsequent clonal haematopoiesis are associated with various adverse health outcomes. C_LIO_LImCAs have also been linked to several immune-mediated diseases, such as LORA, and hence may influence immune cells and their functions. C_LI WHAT THIS STUDY ADDSO_LIAutosomal copy-number loss (Loss) is increased in SSc in aged subjects. C_LIO_LILoss was associated with lcSSc, ACA-SSc. ILD-SSc, and VC-SSc in a dose-dependent manner of cell fraction. C_LIO_LImLOX was associated with SSc and its subtypes only in patients with high cell fraction. C_LIO_LILate-onset SSc and its subtypes show stronger associations with Loss with higher effect sizes compared to non-late onset SSc. C_LI HOW THIS STUDY MIGHT AFFECT RESEARCH, PRACTICE OR POLICYO_LIOur study facilitates further research to recapitulate the current findings in independent cohorts as well as in different ancestries. C_LIO_LIIncorporating profiles of Loss and mLOX in blood into conventional clinical information may enable a better stratification of SSc patients and the development of a better management strategy. C_LIO_LIFurther experimental approaches, such as whole genome sequences and single-cell C_LI RNA sequences, that investigate the underlying molecular mechanisms of phenotypic heterogeneity of SSc driven by Loss and mLOX are also warranted.
Yu, J.
Show abstract
Vaccination frequently elicits suboptimal immunogenicity in organ transplant recipients, particularly those on long-term immunosuppressive therapy, highlighting the need for improved understanding of immunosuppression mechanisms and optimized vaccination strategies. This study enrolled a cohort of 132 individuals and observed significantly lower antibody levels in kidney transplant recipients (KTRs) compared to non-transplant controls (non-KTRs). Antibody levels were inversely associated with both the dosage and duration of immunosuppressive therapy. Complementary small animal studies demonstrated that immunosuppressive treatment dosage-dependently and reversibly impaired antibody production, primarily by depleting immune cells, notably B cells. A single shot of adenoviral vector-based vaccines demonstrated enhanced immunogenicity relative to two shots of alum-adjuvanted protein vaccines, inducing potent neutralizing antibodies (NAbs) and a Th1-biased T-cell response even under continuous immunosuppression. The enhanced response was driven by reduced interference from pre-existing antibodies, sustained transgene expression, and the reprogramming of lipid metabolism to activate T and B cells. Our findings advocate for tailored vaccination strategies, positioning adenoviral vectors as a candidate modality for this vulnerable population.
ramanathan, b.; Cheng Shen, H.; Hudson, M.; Troyanov, Y.; Landon-Cardinal, O.; Gyger, G.; O'Ferrall, E.; Ellezam, B.; Karamchandani, J.; Del Carmen Crespo, C.; Jean, D.; Gerber, Z.; Labrie, M.; Leclair, V.; Allard-Chamard, H.
Show abstract
Autoimmune inflammatory myopathies (AIM) with prominent B cell aggregates (BCM) on muscle biopsy is an uncommon finding. We aimed to compare the characteristics and clinical course of patients with BCM on muscle biopsy to those without and characterize B cell infiltrates in the muscle of these patients. We performed a retrospective study of subjects with AIM in the Canada Inflammatory Myopathy Study (CIMS) cohort to identify cases with BCM on muscle biopsy, which was defined as [≥]30 CD20+ cells/aggregate. AIM cases without BCM that encompassed the broader spectrum of AIM, namely dermatomyositis, overlap myositis and inclusion body myositis were selected as controls. Descriptive statistics were used to compare BCM cases and controls. Cyclic immunofluorescence (Cyc-IF) was performed to characterize inflammatory infiltrates and B cell structures. We included 69 subjects (mean age at diagnosis 51{+/-}16 years, 77% females): 22 BCM, 24 dermatomyositis, 14 overlap myositis, and inclusion body myositis. Most BCM subjects (18/22, 82%) had an associated autoimmune disease: 12 (55%) had systemic sclerosis, 5 (23%) rheumatoid arthritis and one (5%) systemic lupus erythematosus/systemic sclerosis overlap. Extra-muscular features found in BCM patients included arthritis (50%), interstitial lung disease (43%), Raynauds phenomenon (32%), and dermatomyositis rash (27%). Two patients (9%) had facial muscle weakness and one (5%) had positive anti-AChR autoantibodies. In BCM subjects, upper extremities were weaker than lower extremities in 7/21 (33%) of cases. Neck flexor weakness was frequent (17/22, 77%), while neck extensor weakness was uncommon (1/15, 7%). Cyclic immunofluorescence (Cyc-IF) spatial analysis of BCM biopsies displayed many features akin to tertiary lymphoid structures. Findings suggest possible involvement of both the traditional germinal center reaction and the extrafollicular pathway in BCM. In conclusion, in this series of myositis with B cell aggregates reported to date we found clinical similarities (i.e., associated with overlapping autoimmune diseases) and differences (i.e., muscle weakness distribution) with previous reports. The discovery of tertiary lymphoid structures on spatial analysis of muscle biopsies of BCM patients provides novel insight into its pathophysiology and potential therapeutic targets.
Ni, D.; Marsh-Wakefield, F.; McGuire, H. M.; Sheu, A.; Chan, X.; Hawke, W.; Kullmann, S.; Sbierski-Kind, J.; Sierro, F.; Lau, S. M.; Nanan, R.
Show abstract
AimsGestational diabetes mellitus (GDM) is the most common pregnancy-related medical complication. GDM is linked to aberrant immune responses in both mothers and offsprings, specifically, the subsequent development of inflammatory diseases. Whereas prior research has focused on specific immune cell subsets, a comprehensive overview of the impacts of GDM on maternal and fetal immune landscape is lacking. Here, we aim to comprehensively decipher how GDM modulates various immune cell populations in mothers and offsprings. MethodsA prospective, longitudinal case-control study was carried out. Maternal blood from GDM-affected (GDM, n=18) and non-GDM-affected (Ctrl, n=21) mothers were collected at ante-(36-38 weeks of gestation) and post-partum (6-8 weeks post-partum) timepoints. Cord blood from GDM (n=7) and Ctrl (n=11) pregnancies were collected upon C-section. They were analyzed with the state-of-the-art cytometry by time of flight (CyTOF) with a 40-marker panel. Additionally, a publicly available RNA-seq dataset for cord blood mononuclear cells was re-analyzed to confirm results from CyTOF experiments. ResultsCompared to Ctrl, GDM was associated with more activated maternal T cell subsets ante-partum, including increased CD45RO+ and Ki67+ CD4+ T cell populations, which reverted post-partum. GDM-affected maternal innate lymphoid cell (ILC) also exhibited increased granzyme B production ante-partum. On the other hand, in GDM-impacted cord blood, fetal T and B cells were more activated, displaying less naive and more effector phenotypes, further supported by RNA-seq analyses. ConclusionsOur comprehensive analyses revealed that GDM is linked to profound changes in the immune landscapes of the mothers (ante-/post-partum) and foetuses (at birth), casting novel insights towards GDM pathophysiology. Longitudinal immune profiling might be warranted for early detection and stratification of risk, and development of targeted interventions to prevent inflammatory disorders in GDM mothers and their offspring. Research in contextO_LIWhat is already known about this subject? O_LIThe maternal and intrauterine environments are important contributors to long-term health outcomes of mothers and offsprings. C_LIO_LISome maternal and fetal immunity changes have been observed in gestational diabetes mellitus (GDM)-affected pregnancies. C_LIO_LIGDM is associated with increased risk of later-life metabolic and inflammatory diseases in mothers as well as offsprings. C_LI C_LIO_LIWhat is the key question? O_LIWhat are the longitudinal alterations in maternal and fetal immune landscapes in GDM-affected pregnancies? C_LI C_LIO_LIWhat are the new findings? O_LIHigh-dimensional immune profiling provided the most comprehensive overview of alterations in maternal and fetal immune landscapes associated with GDM. C_LIO_LIGDM is associated with skewing of maternal CD4+ T cell and ILC towards activated phenotypes ante-partum. C_LIO_LIGDM is linked to more activated fetal T and B cell profiles. C_LI C_LIO_LIHow might this impact on clinical practice in the foreseeable future? O_LIUnderstanding the complex alterations in the maternal and fetal immune landscape in GDM-affected pregnancy provides insights into the long-term impacts of GDM on the mother and offspring. C_LI C_LI
Cistero, B.; Monforte, V.; Camprubi-Rimblas, M.; Areny-Balaguero, A.; Campana-Duel, E.; Fernandez, A.; Casabella Pernas, A.; Nuez Zaragoza, E.; Martin, I.; Tomas, A.; Minarro, I.; Vila, M.; Cuevas, M.; Sanchez, M.; Belda, X.; Lopez Rodriguez, M.; Teles, T.; Savone, M. F.; Stable, C.; Salom Merce, P.; Guijarro Viudez, C.; Tajan, J.; Goma Fernandez, G.; Martinez, M. L.; Kramer, L.; van Amstel, R.; Diaz Santos, E.; Blanch, L.; Gene Tous, E. M.; Bos, L.; Artigas Raventos, A.; Ceccato, A.
Show abstract
Sepsis is a complex condition with a time-dependent evolution. Longitudinal biomarker dynamics could help us to better characterise sepsis. We hypothesised that the kinetics of biomarkers are associated with sepsis and with the intensity of organ dysfunction, and may have predictive capacity for patient survival. This single-centre, prospective, observational study included adult patients presenting to the Emergency Department (ED) with suspected infection. Patients were included in the study if they had a National Early Warning Score 2 (NEWS 2) of 3 or higher. Blood samples were obtained at baseline, 4hs and 24 hs. Linear mixed models were constructed to analyse the association between biomarker concentrations over time, sepsis diagnosis and organ dysfunction severity. Joint models were used to evaluate the predictive ability of individual biomarker kinetics during the first 24 hours for in-hospital mortality Of 214 screened patients, 173 patients were analysed, and 137 (79%) developed sepsis. Linear mixed models revealed time-dependent decreases in IL10 ({beta} -0.016, 95%CI -0.028 to -0.004), IL1RN ({beta} -0.014, 95%CI -0.024 to -0.004), and IL6 ({beta} -0.012, 95%CI -0.024 to 0.00). Sepsis was associated with higher IL1RN ({beta} 0.378, 95%CI 0.153-0.603), and TNFRSF1A ({beta} 0.40, 95%CI 0.21-0.58); only models evaluating IL6 showed significant interaction between sepsis and time ({beta} -0.14, 95%CI -0.028 to 0.00). SOFA correlated with elevated IL10 ({beta} 0.048, 95%CI 0.021-0.075), IL1RN ({beta} 0.044, 95%CI 0.017-0.071), CCL2 ({beta} 0.046, 95%CI 0.021-0.071), TNFRSF1A ({beta} 0.050, 95%CI 0.030-0.070), and PCT ({beta} 2.63, 95%CI 1.32-3.93); the interaction between SOFA score and time was significant only for IL6 ({beta} -0.003, 95%CI -0.005 to -0.001). Joint survival models (adjusted for age and highest SOFA) identified IL8 (HR 0.655, 95% CrI 0.582-0.728), TNFRSF1A (HR 0.505, 95% CrI 0.419-0.682), and PCT (HR 1.004, 95% CrI 1.001-1.008) as predictors. ConclusionSepsis diagnosis and severity of organ dysfunction may be associated with higher levels and kinetic values of inflammatory biomarkers such as IL1RN and TNFRSF1A. IL6 levels showed a significant association for the interaction of time with both sepsis diagnosis and SOFA score. TNFRSF1A, IL8 and PCT dynamics were found to be associated with survival and could be useful in developing prognosis tools.
Kumar, A.; Kumar, U.; Khan, M. A.; Yadav, R. K.; Singh, A.; Venkataraman, S.; Deepak, K. K.; Dada, R.; Bhatia, R.
Show abstract
Background and AimFibromyalgia is an idiopathic chronic widespread pain syndrome affecting 2-4% of the general population globally. Besides widespread fibromyalgia pain, morning stiffness, associated neurologic as well as sleep problems are also reported. Disease is more prevalent in females of middle-age group with low socioeconomic status, thus deteriorating overall productivity and psychosocial health. There is no permanent cure of the disease. This study aimed to explore, validate and assess the effect of four weeks of supervised yogic intervention on pain status, quality of life, sleep, cortical excitability, flexibility and range of motion in fibromyalgia patients, as compared to standard therapy. MethodCase-control study, interventional study and assessor-blined randomized controlled trial, conducted in 120 fibromyalgia patients (60 yoga group: 60 waitlisted controls) and 60 age-matched healthy controls. Pain was assessed subjectively, using questionnaires and objectively, using quantitative sensory testing and ELISA. Sleep and quality of life were assessed using common and disease specific decsiptors. Flexibility and range of motion was assessed using sit and reach box, lateral goniometry and modified Schobers test. Transcranial magnetic stimulation on M1 was used to assess corticomotor excitability of participants. Study parameters were assessed at baseline and after four weeks of the intervention. ResultsA significantly poor sleep, flexibility and quality of life was reported in the fibromyalgia patients due to excruciating pain (VAS = 6.92{+/-}0.12); corticomotor function was also abnormal in the patients, which were restored after four weeks of yogic intervention. On subjective and objective assessment of pain, we found significant relief and improvement in pain status in the yoga group as compared to the waitlisted controls. Fibromyalgia impact, sleep, quality of life and flexibility were also found solely better in fibromyalgia patients undergoing yogic interventions. Cortical parameters, specifically RMT, MEPs and MEP recruitment curves showed a significant improvement in yoga group as compared to waitlisted controls. ConclusionFour weeks of regular and supervised yogic intervention may ameliorate pain, improve flexibility and range of motion and changes cortical plasticity in the Indian cohort of fibromyalgia patients, as compared to standard therapy. Yoga-based interventions can also improve overall quality of life and sleep impairmentsby reducing catastrophization and fibromyalgia impact.
Suda, K.; Abe, K.; Nishimura, Y.; Tanaka, M.; Nagasako, Y.; Rao, X.; Zhang, J.; Zeng, S.; Fujiwara, K.; Yamada, S.; Ishii, J.; Yoshida, S.; Shibuya, S.; Miyano, G.
Show abstract
PurposeHirschsprung-associated enterocolitis remains a major postoperative complication of Hirschsprungs disease (HD), and impaired epithelial barrier integrity has been proposed as a contributing factor. In this study, we investigated whether 12-hydroxyheptadecatrienoic acid (12-HHT), an endogenous leukotriene B4 receptor 2 (BLT-2) agonist, enhances the epithelial barrier and exerts anti-inflammatory effects in patient-derived colonic organoids. MethodsNormoganglionic specimens from rectal/rectosigmoid HD at pull-through (HD-N; n = 8) and transverse colon specimens from anorectal malformation (ARM) at colostomy closure (n = 10) were used to generate colonic organoids. Epithelia were isolated using ethylenediaminetetraacetic acid and subsequently embedded in Matrigel. Baseline expression of TJP1, TJP2, F11R (encoding junctional adhesion molecule-A), JAM2, CLDN1, CLDN3, CLDN4) and LTB4R2 (encoding BLT-2) was assessed by qPCR and immunoblotting. Organoids were then treated with 12-HHT (0.4, 2, or 10 M) for 7 days, followed by qPCR. Additional experiments assessed cytokine expression (IL1B, IL6) and TJPs after 24 h with tumor necrosis factor- (TNF-, 100 ng/mL) plus phosphate buffered saline or 12-HHT. Barrier function was evaluated using FITC-dextran influx assays. ResultsHD-N and ARM organoids exhibited similar growth efficiencies. Baseline expression for F11R, JAM2, CLDN1, CLDN3, CLDN4, and LTB4R2 was significantly lower in HD-N than in ARM. TJPs were upregulated by 12-HHT at 2 and 10 M in both groups, with stronger effects in ARM. In HD-N organoids, 10 M 12-HHT suppressed TNF--induced IL1B and IL6 elevation mitigated tight junction proteins (TJPs) downregulation more effectively than 2 M. 12-HHT attenuated TNF--induced FITC-dextran influx in HD-N organoids. Conclusion12-HHT may exert anti-inflammatory effects by integrating TJPs of HD-N.
Pinal-Fernandez, I.; Pak, K.; Casal-Dominguez, M.; Munoz-Braceras, S.; Wigerblad, G.; Dell'Orso, S.; Naz, F.; Islam, S.; Gutierrez-Cruz, G.; Kinder, T. B.; Ogbonnaya-Whittlesey, S. A.; Fernandez-Codina, A.; Giannini, M.; Ellezam, B.; Laverny, G.; Gilbart, V.; Landon-Cardinal, O.; Hudson, M.; Troyanov, Y.; Randazzo, D.; Kenea, A.; Matas-Garcia, A.; Garrabou, G.; Aldecoa, I.; Ailen-Caballero, G.; Gil-Vila, A.; Trallero, E.; Milone, M.; Liewluck, T.; Naddaf, E.; Espinosa, G.; Simeon-Aznar, C. P.; Guillen-Del-Castillo, A.; Preusse, C.; Kleefeld, F.; Bublitz, N.; Stenzel, W.; Meyer, A.; Pope, J. E.
Show abstract
Autoantibody internalization has been implicated in autoimmune disease pathogenesis, yet its mechanisms, and generality across different diseases, cell types, and affected tissues remain poorly defined. Using bulk RNA sequencing, we identified reproducible, autoantibody-specific transcriptomic signatures consistent with autoantigen dysfunction in muscle biopsies from patients with anti-Mi2 dermatomyositis and anti-PM/Scl scleromyositis across independent cohorts. Electroporation of purified patient IgG into primary cultures of healthy cells was sufficient to induce the corresponding transcriptomic programs in vitro. Direct immunofluorescence demonstrated immunoglobulin internalization into subcellular compartments matching the localization of the autoantigen in different affected tissues. Spatial transcriptomic analyses revealed that antibody-secreting cells translocated cytoplasmic material (i.e., immunoglobulin RNA) into adjacent affected cells expressing autoantibody-specific transcripts. The disease-specific transcripts were present not only in muscle fibers, but also in other cells, including macrophages, endothelial cells, and fibroblasts. Autoantibody-induced transcriptomic programs were associated with cell damage and autoantibody-specific reactive inflammatory programs, including activation of type I interferon and TGF-{beta}1 signaling in anti-Mi2 dermatomyositis and activation of type II interferon in anti-PM/Scl scleromyositis. Antibody internalization was also observed in different tissues from patients with other autoimmune diseases, including anti-U1RNP mixed connective tissue disease, anti-Ku overlap syndrome, and anti-Scl70 systemic sclerosis. Together, these findings establish autoantibody internalization as a shared pathogenic mechanism across diverse autoimmune diseases, providing a unifying framework for conditions driven by autoantibodies against intracellular antigens.
Cai, L.; Hua, Y.; Lu, W.; Bing, h.; Gao, q.; Zhang, W.
Show abstract
The red cell distribution width (RDW) is a recognized prognostic marker in sepsis, yet its dynamic changes over time and their relationship with outcomes remain unexplored. This study aimed to identify distinct RDW trajectories during the early phase of sepsis and evaluate their association with mortality. We conducted a retrospective cohort study using data from the MIMIC-IV database (n=3,813) as the derivation cohort and from the First Affiliated Hospital of Kunming Medical University (n=467) for external validation. Sepsis patients with at least seven RDW measurements within the first ten days of hospitalization were included. Group-based trajectory modeling (GBTM) was employed to identify RDW trajectories. A three-trajectory model was selected based on model fit indices and clinical interpretability: Trajectory 1 (Slow-Decrease, 32.97%), Trajectory 2 (Slow-Increase, 43.30%), and Trajectory 3 (Fluctuating-Rapid Decrease, 23.73%). In the our study, Cox models adjusted for confounders revealed that, compared to Trajectory 1, Trajectory 3 was independently associated with significantly increased 30-day (HR 1.47, 95% CI 1.17-1.84) and 90-day mortality (HR 1.54, 95% CI 1.25-1.88). Conversely, Trajectory 2 was associated with the most favorable survival rates. Kaplan-Meier analysis consistently showed the highest mortality in the Trajectory 3 group. External validation confirmed the models robustness and the consistent prognostic value of the identified trajectories. We conclude that dynamic RDW trajectories, readily identifiable from routine clinical data, provide significant prognostic information beyond single-time-point measurements and can aid in the risk stratification of sepsis patients.
Inamo, J.; Bylinska, A.; Smith, M.; Vanderlinden, L.; Wright, C.; Stephens, T.; Feser, M. L.; Striebich, C. C.; O'Dell, J. R.; Sparks, J. A.; Davis, J. M.; Graf, J.; McMahon, M. A.; Solow, E. B.; Forbess, L. J.; Tiliakos, A. N.; Fox, D. A.; Danila, M. I.; Horowitz, D. L.; Kay, J.; James, J. A.; Holers, V. M.; Deane, K. D.; Guthridge, J. M.; Zhang, F.
Show abstract
Individuals who have serum elevations of anti-cyclic citrullinated protein (anti-CCP) antibodies are at risk for developing rheumatoid arthritis (RA), yet immunologic factors that lead to a transition from pre- to clinical RA remain unclear. Here, we used materials from anti-CCP antibody-positive individuals enrolled in a clinical trial that evaluated the efficacy of hydroxychloroquine to prevent clinical RA, and performed multi-modal single-cell profiling (transcriptome, surface proteins, T/B-cell receptor sequencing, and chromatin accessibility) on samples obtained at baseline and at RA onset in those who developed clinical RA (Converters) or follow-up point in matched Nonconverters. At both baseline and follow-up, Converters had expansions of peripheral helper T (Tph) cells and CD8+ T cells expressing GZMK and GZMB, along with elevated potentially autoreactive T-cell receptors in CD4+ T cells compared to Nonconverters. Induction of age-associated B cell signatures was observed in B cells of Converters prior to RA onset. Epigenetic profiling further identified chromatin accessibility changes in Converters over time, particularly within myeloid and NK cells. Lastly, predictive modeling using baseline immune features, including Tph cells, GZMK+XCL1+ CD8+, and GZMB+CD57+ CD8+ T cells, together with clinical features such as anti-CCP3 levels, RF-positivity, and HLA shared epitope status, stratified RA risk and predicted time to onset. These findings define immune endotypes in pre-RA that could serve as targets for future preventive interventions and be used to stratify the risk of developing clinical RA in anti-CCP antibody-positive individuals.
Lalaurie, C.; Liu, L.; Khan, A.; Wang, C.; Rich, S.; Barr, R. G.; Bernstein, E.; Kiryluk, K.; McDonnell, T. C. R.; Luo, Y.
Show abstract
Anti-{beta}2-glycoprotein I (anti-{beta}2GPI) antibodies are central to the pathogenesis of antiphospholipid syndrome (APS), an autoimmune disease characterized by a strong predisposition to venous thromboembolism (VTE). In this study, we conducted a multi-ancestry genome-wide association study (GWAS) of quantitative total anti-{beta}2GPI levels in 5,969 participants enrolled in the Multi-Ethnic Study of Atherosclerosis (MESA) and identified a genome-wide significant association at the APOH locus. Paradoxically, genetically determined increases in anti-{beta}2GPI levels at this locus were associated with lower VTE risk. Fine-mapping and functional genomics prioritized the missense variant rs1801690 (W335S) in {beta}2GPI (apolipoprotein H, [APOH]) as the most likely causal variant. This variant has an allele frequency of 5-6% in European and East Asian ancestries but only 1% in African ancestries. Integrating prior experimental studies, molecular dynamics simulations and structure-based epitope prediction, we propose a dual-effect mechanism whereby W335S reduces thrombotic risk by disrupting phospholipid binding in Domain V, yet increases autoantibody production through conformational changes that enhance epitope exposure in Domains I and II. These findings mechanistically uncouple autoantibody formation from thrombotic risk in carriers of the W335S variant, and suggest that APOH genotype may represent a clinically relevant genetic biomarker with potential utility for thrombotic risk stratification in anti-{beta}2GPI-positive individuals.
Boström, L.; Hagström, S.; Engström, J.; Larsson, A. O.; Friberg, H.; Lengquist, M.; Frigyesi, A.
Show abstract
BackgroundSepsis is a major public health challenge, and reliable biomarkers are essential for distinguishing sepsis from other conditions. Neutrophil Gelatinase-Associated Lipocalin (Neutrophil gelatinase-associated lipocalin (NGAL)) has shown promise as a diagnostic marker due to its role in the immune response. This study evaluates plasma NGAL as a diagnostic tool at the time of ICU admission. MethodsWe analysed plasma NGAL and C-reactive protein (CRP) levels in 4732 adult patients admitted to four ICUs between 2015 and 2018. All patients were retrospectively screened for Sepsis-3 criteria at ICU admission. The discriminative performance of NGAL and CRP for sepsis was assessed using receiver operating characteristic (ROC) analysis, with NGAL levels adjusted for Chronic kidney disease (CKD) and age. Patients were stratified by renal function. ResultsPlasma NGAL levels were significantly higher in septic patients (p<0.001). For the whole cohort, NGAL alone yielded an Area under the curve (AUC) of 0.67 (Confidence interval (CI) 0.66-0.69), CRP yielded an AUC of 0.72 (CI 0.71-0.73, p<0.001), and combining NGAL with CRP nominally improved discriminative performance (AUC 0.74 vs 0.72, p<0.001). Stratified analyses indicated that NGAL, together with CRP, significantly outperformed CRP alone in patients with no kidney injury and those with Acute Kidney Injury (AKI) only. In contrast, differences were not significant in patients with CKD only or CKD and AKI. ConclusionIn this large cohort, NGAL showed modest discrimination for sepsis, with a nominal improvement when combined with CRP. These findings do not indicate that NGAL meaningfully improves sepsis diagnosis in the ICU.
Tomar, N.; Choudhury, S.; Arora, A.; Sharma, P.; Vaibhav, R.; Hasan, R.; Jan, S.; Kaur, R.; Rajput, T.; Lomada, M. S.; Pemmasani, S. K.; Kumar, A.
Show abstract
Background and AimMASLD affects 30-38% of Indian adults, yet the contribution of genetic risk variants to disease susceptibility and fibrosis progression remains poorly characterised. We investigated the association of 12 candidate SNPs with MASLD susceptibility and fibrosis severity in North Indian patients, benchmarking allele frequencies against IndiGenomes and global populations. MethodsSixty-nine MASLD patients (75.4% male; median BMI 29.8 kg/m{superscript 2}) from a tertiary care liver clinic in New Delhi were genotyped for 12 SNPs using Illumina custom BeadChip array and Sanger sequencing. Patients were stratified by liver stiffness measurement (LSM): significant fibrosis ([≥]8 kPa, n=38) versus no significant fibrosis (<8 kPa, n=31). Allele frequencies were compared with IndiGenomes ([~]1,020 Indian individuals) and 1000 Genomes populations. ResultsPNPLA3 rs738409 G allele was the strongest within-cohort predictor of significant fibrosis (allelic OR 2.89, 95% CI 1.35-6.19, P=0.006; dominant model OR 3.94, P=0.008), with carriers demonstrating higher LSM (median 15.6 vs. 7.5 kPa, P=0.005). SAMM50 rs3761472 (OR 2.12, P=0.065) and FTO rs9939609 (OR 2.08, P=0.089) showed non-significant trends. In the population-level comparison, APOC3 rs2854116 T allele was the only variant significantly enriched after Bonferroni correction (64.0% vs. 47.9%; OR 1.93, 95% CI 1.35-2.77, P<0.001), followed by PNPLA3 (33.3% vs. 24.1%, OR 1.57, P=0.019) and SAMM50 (31.2% vs. 22.6%, OR 1.55, P=0.028). Notably, APOC3 showed no association with fibrosis (OR 0.96, P=1.000), suggesting a role in susceptibility rather than progression. All SNPs were in Hardy-Weinberg equilibrium. ConclusionsThis study reveals a dissociation between genetic determinants of MASLD susceptibility and fibrosis progression in North Indian patients. APOC3 rs2854116 predisposes to MASLD at the population level, while PNPLA3 rs738409 drives fibrosis severity within established disease, underscoring the need for ancestry-specific genetic risk stratification. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=112 SRC="FIGDIR/small/26347059v1_ufig1.gif" ALT="Figure 1"> View larger version (69K): org.highwire.dtl.DTLVardef@187f189org.highwire.dtl.DTLVardef@25d3borg.highwire.dtl.DTLVardef@13704e9org.highwire.dtl.DTLVardef@1238cce_HPS_FORMAT_FIGEXP M_FIG C_FIG
McDermott, G. C.; Wang, X.; Davis, N. A.; Paudel, M.; Qi, Y.; Kowalski, E.; Qian, G.; Getachew, L. S.; Mueller, K. T.; Saavedra, A. A.; O'Keeffe, L. A.; Beaule, M.; Gill, R.; Gagne, S.; Byrne, S.; Cho, M. H.; Silverman, E. K.; Negron, M.; Vanni, K. M. M.; Bolden, C.; Mahajan, T.; Mulcaire-Jones, E.; Kortam, N.; Dellaripa, P. F.; Juge, P.-A.; Doyle, T. J.; Bolster, M. B.; Deane, K. D.; Khanna, D.; England, B. R.; San Jose Estepar, R.; Washko, G. R.; Sparks, J. A.
Show abstract
ObjectiveQuantitative computed tomography (QCT) can automatically quantify parenchymal abnormalities on chest CT imaging using deep learning. We leveraged QCT to detect pulmonary abnormalities in patients with early rheumatoid arthritis (RA) compared to healthy controls. MethodsWe analyzed high-resolution CT chest imaging from participants with early RA in the prospective, multicenter, SAIL-RA study and healthy non-smoking controls from the COPDGene study. A deep learning classifier quantified the percentage of normal lung, interstitial abnormalities, and emphysema for each participant. We compared the percentage of QCT features between early RA participants and healthy comparators and examined associations using multivariable linear regression. ResultsWe analyzed 200 participants with early RA (median RA duration 8.3 months, mean age 55.7 years, 74.5% female) and 104 healthy controls (mean age 62.0 years, 68.3% female). The median percentage of interstitial abnormalities on QCT was 3.7% (IQR 2.1, 6.1%) for early RA and 1.6% (IQR 0.8, 2.4%) for healthy controls (p<0.0001). Early RA was associated with 9.3% less normal lung on QCT than healthy controls, adjusted for age and sex (p<0.0001). Among RA participants, QCT interstitial abnormalities were associated with older age (multivariable {beta}=0.1 per year, 95%CI 0.07-0.2, p<0.0001) and higher DAS28-ESR (multivariable {beta}=0.6 per unit, 95%CI 0.01-1.3, p=0.046). ConclusionParticipants with early RA had less normal lung and more interstitial abnormalities on a deep learning-derived QCT measure than healthy controls. These results suggest that loss of normal lung is already present in early RA and emphasizes the urgent need for strategies to preserve lung health in RA.
Bolig, T. C.; Grudzinski, K.; Shawabkeh, M.; Selvan, K. C.; Goodwin, R. J.; Olson, E.; Bemiss, B. C.; Parekh, N.; Savas, H.; Dematte, J. E.; Esposito, A. J.
Show abstract
ObjectiveMyositis-associated interstitial lung disease (myositis-ILD) consists of two predominant radiologic patterns of lung injury--nonspecific interstitial pneumonia (NSIP) and organizing pneumonia (OP)--that oftentimes coexist. However, it remains unclear whether either is associated with clinical outcomes. We aimed to assess the therapeutic response in patients with NSIP-compared to those with OP-predominant myositis-ILD. MethodsThis retrospective, single-center cohort study recruited participants from the Northwestern University ILD Registry with a circulating myositis-associated antibody, ILD, and at least 6 months of follow-up while on immunomodulatory therapy during a 24-month observation period after diagnosis. Two thoracic radiologists determined the predominant radiologic pattern (NSIP or OP). The primary outcome was the absolute change in forced vital capacity (FVC) at 24 months post-diagnosis. Secondary outcomes included changes in the diffusing capacity of the lung for carbon monoxide (DLCO) and radiologic qualitative and quantitative measures of lung injury. ResultsForty-one participants were included in analyses. 71% had an OP-predominant while 29% had an NSIP-predominant radiologic pattern of lung injury. Both exposure cohorts had improvement in mean absolute FVC (OP cohort = +0.18L [p=0.005], NSIP cohort = +0.24L [p=0.07]) over the 24-month observation period. The OP (p<0.05) but not the NSIP cohort (p=0.20) had an increase in DLCO. The OP cohort demonstrated improvement in the qualitative assessment of follow-up imaging (p<0.05), driven by quantitative improvement in groundglass/consolidative opacities (p=0.006). A subset of participants demonstrated features of NSIP/OP overlap and had greater baseline radiologic severity of lung injury. ConclusionPatients with circulating myositis-associated antibodies and an OP-predominant pattern of lung injury may have a more favorable response to therapy than those with NSIP. Further studies are needed to validate our findings and delineate other features cognate with these associations. Significance and InnovationsO_LIRadiologic phenotyping may predict therapeutic response in myositis-ILD. This study demonstrates that an OP-predominant computed tomography (CT) pattern of lung injury is associated with greater improvement in lung function and radiologic signs of inflammation over 24 months on at least 6 months of immunomodulatory therapy compared with an NSIP-predominant pattern, suggesting that CT pattern may provide clinically meaningful prognostic information. C_LIO_LIFirst study to integrate blinded qualitative radiologic adjudication with quantitative CT scoring in myositis-ILD. By combining dual-radiologist review with Kazerooni quantitative scoring and longitudinal pulmonary function testing, this study offers a rigorous and multidimensional assessment of treatment response. C_LIO_LIExpands risk stratification beyond antibody-based toward imaging-based phenotyping strategies. In a heterogeneous population defined by diverse myositis-associated antibodies, this work introduces radiologic pattern as a practical and accessible framework for anticipating treatment responsiveness. C_LIO_LIProvides hypothesis-generating data for precision management in myositis-ILD. The findings support the concept that imaging-defined subgroups may exhibit differential therapeutic trajectories, laying groundwork for future multicenter studies integrating CT phenotype, antibody profile, and treatment strategy. C_LI
Koller, C. N.; Maglione, J.; Blanchard, M.; Kleyer, A.; Folle, L.; Geurts, J.; Huegle, T.
Show abstract
ObjectiveTo clinically evaluate a digital biomarker, the Finger Fold Index (FFI), derived from the ratio of joint diameter to finger fold surface area in hand photographs, for assessing joint swelling in inflammatory arthritis. MethodsSmartphone hand photographs from two routine care cohorts of patients with rheumatoid (RA) and psoriatic arthritis (PsA) were analyzed using a machine learning pipeline for automated detection and processing of proximal interphalangeal (PIP) joints. The FFI was clinically evaluated by correlation with joint swelling scores (0-3) and DAS28-CRP. A healthy cohort was used to establish FFI reference ranges, which were then compared to the arthritis cohorts. ResultsA total of 1275 PIP joint images of 124 arthritis patients and 53 healthy individuals were included. FFI values correlated with swelling scores in the arthritis population with r = 0.443 (95% CI 0.384-0.498). A correlation was observed between the mean FFI and DAS28-CRP dichotomized at 3.2 (r = 0.310, 95% CI 0.123-0.475). FFI values exceeding the healthy reference ranges were associated with swelling (Cramers V = 0.400-0.631; p < 0.001). ConclusionFFI values derived from hand photographs showed a significant association with clinical joint swelling and disease activity in RA and PsA patients. Longitudinal studies are needed to assess sensitivity to change and to establish whether this biomarker can be reliably used for remote patient monitoring.
Zhang, L.; Jin, L.
Show abstract
This study aimed to evaluate the prognostic value of quantitative analysis of {superscript 1}F-FDG positron emission tomography (PET)/computed tomography (CT) metabolic parameters in patients with pancreatic ductal adenocarcinoma (PDAC) after neoadjuvant chemotherapy (NACT). A retrospective analysis was conducted on the clinical and imaging data of 44 patients with pathologically confirmed PDAC who received NACT. All patients completed standard chemotherapy regimens and underwent {superscript 1}F-FDG PET/CT examinations within 2 weeks before and after chemotherapy. Multiple metabolic parameters of lesions were extracted, their percentage changes were calculated, and the optimal cut-off values for each parameter were determined. Kaplan-Meier survival analysis and Cox proportional hazards regression analysis were applied to explore the prognostic value of the metabolic parameters, and the prognostic stratification performance of PET Response Criteria in Solid Tumors (PERCIST) 1.0 was compared with that of Response Evaluation Criteria in Solid Tumors (RECIST) 1.1. PERCIST 1.0 demonstrated significantly superior prognostic stratification compared with RECIST 1.1. A peak standardized uptake value corrected for lean body mass (SULpeak2) > 3.07 and a percentage change in SULpeak between pre- and post-treatment scans ({Delta}SULpeak%) [≤] 37.66% were identified as independent risk factors for poor prognosis. Furthermore, SUL-related parameters exhibited markedly better predictive efficacy than traditional metabolic parameters such as the standardized uptake value and metabolic tumor volume. Quantitative analysis of {superscript 1}F-FDG PET/CT metabolic parameters can effectively predict prognosis in PDAC after NACT, and PERCIST 1.0 is a more optimal criterion for efficacy and prognostic assessment. A post-NACT SULpeak > 3.07 and {Delta}SULpeak% [≤] 37.66% were core independent indicators for predicting poor prognosis in these patients.
Winsor, G.; Cook, J.; Edwards, K.; Gill, E.; Petersen, C.; Garlock, E.; Griffiths, E.; Ames, S.; Erdman, L.; Becker, A.; Denburg, J.; Patrick, D.; Doiron, D.; Jones, M.; Dai, V.; Al-Mamaar, K.; Kwan, A.; Lee, B.; Lee, B.; Mercada Mendoza, L.; Sbihi, H.; Azeez, R.; Dai, D.; Qiam, Y. C.; He, S.; Parks, J.; Reyna, M.; Bode, L.; Duan, Q.; Eiwegger, T.; Goldenberg, A.; Lotoski, L.; McNagny, K.; Surette, M.; Takaro, T.; Hystad, P.; Ambalavanan, A.; Anand, S.; Arietta, M.-C.; DeSouza, R.; Fehr, K.; Navaranjan, G.; Field, C.; Scott, J.; Foong, J.; Pace, K.; Pham, M.; Brookes, E.; Dawod, B.; Helm, M.;
Show abstract
Identification of early interventions to reduce/eliminate asthma - the most common chronic disease among children - could significantly reduce burden on the healthcare system. Large-scale asthma Exposome-Wide Association Studies (ExWAS) could identify potential interventions, however integration of diverse data is required to address association confounders. The CHILD Cohort Study has followed 3,454 healthy Canadian children and their families from early pregnancy, collecting exceptionally diverse data including 24,852 variables from participant questionnaires, clinical data, household and neighbourhood-level exposures, and sample-derived chemical analytic/omic datasets. Here, we report integration of these datasets into the CHILDdb database platform, and use these data to perform ExWAS and machine learning analyses, identifying and further characterizing associations between childhood asthma and 2,954 diverse early exposures (pregnancy to age 5). Significant asthma associations include antibiotic use, human milk components, DEHP phthalate, and mothers prenatal cleaning product/disinfectant exposure. Subsequent analysis revealed epigenetic changes in the cord blood at birth, after prenatal cleaner exposure, and different microbiome and/or inflammatory cytokine changes associated with different asthma-associated exposures in the child. Collective results support asthma as a heterogeneous condition involving multiple etiologies, with associated endotypes, including prenatal exposures with potential transgenerational effects, and suggest targets for early interventions.